All packages are available for install with
Pyvolve, a python platform to simulate sequences along a phylogeny using continuous-time Markov models.
R Packages and Shiny Apps
alignfigR, an R package to create multiple sequence alignment figures. Available for install from
I am a contributor to the ongoing development of the bioinformatics software package HyPhy (“Hypothesis testing with Phylogenies), which contains a wide variety of methods (and features a customizable batch language!) for studying evolutionary dynamics in genetic/genomic data.