Inaugural 'Behind the Scenes' (June 10, 2018)
Herein lies my inaugural ~~ BEHIND THE SCENES ~~ (you can tell it’s serious because of the tildes) blog post, where I give all you eager readers a glimpse into how this project came together. This one is about my new paper with Sergei Pond, The substitution model is largely irrelevant for site-specific protein relative rate inference, which was just published in MBE.
Brief Introduction to Pyvolve (June 01, 2015)
This blog post contains a brief tutorial for Pyvolve, an open-source Python module for simulating sequences along phylogenies (Spielman and Wilke, 2015). A comprehensive user-manual for Pyvolve is available with the most recent release from this github repository.